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The proto-Nucleic Acid Builder: a software tool for constructing nucleic acid analogs
Asem Alenaizan, Joshua L Barnett, Nicholas V Hud, C David Sherrill, Anton S Petrov
Publication Date:
Article Pages: 10 Open access contents
Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations
Guangsheng Pei, Ruifeng Hu, Yulin Dai, Astrid Marilyn Manuel, Zhongming Zhao, Peilin Jia
Publication Date:
Article Pages: 13 Open access contents
UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles
Smriti Chawla, Sudhagar Samydurai, Say Li Kong, Zhengwei Wu, Zhenxun Wang, Wai Leong TAM, Debarka Sengupta, Vibhor Kumar
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Article Pages: 1 Open access contents
<i>cola</i>: an R/Bioconductor package for consensus partitioning through a general framework
Zuguang Gu, Matthias Schlesner, Daniel Hübschmann
Publication Date:
Article Pages: 1 Open access contents
Optimized design of antisense oligomers for targeted rRNA depletion
Wesley A Phelps, Anne E Carlson, Miler T Lee
Publication Date:
Article Pages: 1 Open access contents
Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences
Ilias Georgakopoulos-Soares, Ioannis Mouratidis, Guillermo E Parada, Navneet Matharu, Martin Hemberg, Nadav Ahituv
Publication Date:
Article Pages: 1 Open access contents
e-MutPath: computational modeling reveals the functional landscape of genetic mutations rewiring interactome networks
Yongsheng Li, Brandon Burgman, Ishaani S Khatri, Sairahul R Pentaparthi, Zhe Su, Daniel J McGrail, Yang Li, Erxi Wu, S Gail Eckhardt, Nidhi Sahni, S Stephen Yi
Publication Date:
Article Pages: 1 Open access contents
TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data
Junil Kim, Simon T. Jakobsen, Kedar N Natarajan, Kyoung-Jae Won
Publication Date:
Article Pages: 1 Open access contents
<span style="font-variant: all-small-caps">CoBold</span>: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation <i>in vivo</i>
Adrián López Martín, Mohamed Mounir, Irmtraud M Meyer
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Article Pages: 1 Open access contents
Decoding the epitranscriptional landscape from native RNA sequences
Piroon Jenjaroenpun, Thidathip Wongsurawat, Taylor D Wadley, Trudy M Wassenaar, Jun Liu, Qing Dai, Visanu Wanchai, Nisreen S Akel, Azemat Jamshidi-Parsian, Aime T Franco, Gunnar Boysen, Michael L Jennings, David W Ussery, Chuan He, Intawat Nookaew
Publication Date:
Article Pages: 1 Open access contents