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        <title>Nova Reader - Subject</title>
        <link>https://www.novareader.co</link>
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        <copyright>Newgen KnowledgeWorks</copyright>
        <item>
            <title><![CDATA[Topological defects produce kinks in biopolymer filament bundles]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766060176843-097b9004-e0f2-4840-a615-d294d46d9723/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2024362118</link>
            <description><![CDATA[<p class="para" id="N65542">A common structural motif for stress-bearing intracellular structures and tissues is a network of filament bundles. When observed in optical microscopy, these bundles often show localized bends—kinks—in their contour even though the stress-free state of their constituent filaments is straight. Using a combination of analytical mechanics and large-scale, finite-element Brownian dynamics simulations, we show that the optically observable kinks are related to topological defects in the interior, nanoscale structure of the bundle. Moreover, the kinks are more compliant to bending than the rest of the bundle. As a result, defected bundle networks must contain a random distribution of soft hinges, which, being the most compliant elastic elements, control the low-energy excitations of these bundle networks.</p><p class="para" id="N65539">Bundles of stiff filaments are ubiquitous in the living world, found both in the cytoskeleton and in the extracellular medium. These bundles are typically held together by smaller cross-linking molecules. We demonstrate, analytically, numerically, and experimentally, that such bundles can be kinked, that is, have localized regions of high curvature that are long-lived metastable states. We propose three possible mechanisms of kink stabilization: a difference in trapped length of the filament segments between two cross-links, a dislocation where the endpoint of a filament occurs within the bundle, and the braiding of the filaments in the bundle. At a high concentration of cross-links, the last two effects lead to the topologically protected kinked states. Finally, we explore, numerically and analytically, the transition of the metastable kinked state to the stable straight bundle.</p>]]></description>
            <pubDate><![CDATA[2021-04-05T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Van der Waals interaction affects wrinkle formation in two-dimensional materials]]></title>
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            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2025870118</link>
            <description><![CDATA[<p class="para" id="N65542">Instabilities and formation of complex patterns play an extremely important role in many branches of science. Understanding the origin of instabilities is very important for many technologies. We demonstrate the formation of instabilities (radial wrinkles around bubbles) in atomically thin crystals. Two-dimensional crystals, arranged into van der Waals heterostructures, allow full control over the mechanical properties of the components and the interaction between them, making such experiments easy to reproduce and allowing one to understand the basic, underlying physics of such effects. Such heterostructures allow the observation of instabilities around structural defects (bubbles) where the crystal structure plays a significant role, providing insights into these effects. Such instabilities allow assessment of the elastic and interaction properties of the membranes.</p><p class="para" id="N65539">Nonlinear mechanics of solids is an exciting field that encompasses both beautiful mathematics, such as the emergence of instabilities and the formation of complex patterns, as well as multiple applications. Two-dimensional crystals and van der Waals (vdW) heterostructures allow revisiting this field on the atomic level, allowing much finer control over the parameters and offering atomistic interpretation of experimental observations. In this work, we consider the formation of instabilities consisting of radially oriented wrinkles around mono- and few-layer “bubbles” in two-dimensional vdW heterostructures. Interestingly, the shape and wavelength of the wrinkles depend not only on the thickness of the two-dimensional crystal forming the bubble, but also on the atomistic structure of the interface between the bubble and the substrate, which can be controlled by their relative orientation. We argue that the periodic nature of these patterns emanates from an energetic balance between the resistance of the top membrane to bending, which favors large wavelength of wrinkles, and the membrane-substrate vdW attraction, which favors small wrinkle amplitude. Employing the classical “Winkler foundation” model of elasticity theory, we show that the number of radial wrinkles conveys a valuable relationship between the bending rigidity of the top membrane and the strength of the vdW interaction. Armed with this relationship, we use our data to demonstrate a nontrivial dependence of the bending rigidity on the number of layers in the top membrane, which shows two different regimes driven by slippage between the layers, and a high sensitivity of the vdW force to the alignment between the substrate and the membrane.</p>]]></description>
            <pubDate><![CDATA[2021-03-31T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Self-shaping liquid crystal droplets by balancing bulk elasticity and interfacial tension]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766030429259-ba03a541-afc2-41b6-873a-8f12b1a1421e/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2011174118</link>
            <description><![CDATA[<p class="para" id="N65542">Liquid crystal (LC) research is rapidly expanding to include studies of curved and topologically nontrivial structures. Here, we explore the role of the bulk LC elasticity and interfacial free energy under weak thermal stimuli to achieve structural transformations in LC emulsions using two different surfactants. Our method is universal and could be used for any LC material or phase. A theoretical model for transforming LC emulsions into uniform fibers and vice versa is presented. We also show the self-shaping of smectic vesicle structures and monodispersed droplet formation at the nematic–smectic transition, utilizing the LC bulk elasticity. This work shows the potential to obtain the controllable shape of complex curved structures for a constant volume of different LCs and other soft materials.</p><p class="para" id="N65539">The shape diversity and controlled reconfigurability of closed surfaces and filamentous structures, universally found in cellular colonies and living tissues, are challenging to reproduce. Here, we demonstrate a method for the self-shaping of liquid crystal (LC) droplets into anisotropic and three-dimensional superstructures, such as LC fibers, LC helices, and differently shaped LC vesicles. The method is based on two surfactants: one dissolved in the LC dispersed phase and the other in the aqueous continuous phase. We use thermal stimuli to tune the bulk LC elasticity and interfacial energy, thereby transforming an emulsion of polydispersed, spherical nematic droplets into numerous, uniform-diameter fibers with multiple branches and vice versa. Furthermore, when the nematic LC is cooled to the smectic-A LC phase, we produce monodispersed microdroplets with a tunable diameter dictated by the cooling rate. Utilizing this temperature-controlled self-shaping of LCs, we demonstrate life-like smectic LC vesicle structures analogous to the biomembranes in living systems. Our experimental findings are supported by a theoretical model of equilibrium interface shapes. The shape transformation is induced by negative interfacial energy, which promotes a spontaneous increase of the interfacial area at a fixed LC volume. The method was successfully applied to many different LC materials and phases, demonstrating a universal mechanism for shape transformation in complex fluids.</p>]]></description>
            <pubDate><![CDATA[2021-03-31T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Pattern formation and polarity sorting of driven actin filaments on lipid membranes]]></title>
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            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2017047118</link>
            <description><![CDATA[<p class="para" id="N65542">Pattern formation processes in active systems give rise to a plethora of collective structures. Predicting how the emergent structures depend on the microscopic interactions between the moving agents remains a challenge. By introducing a high-density actin gliding assay on a fluid membrane, we demonstrate the emergence of polar structures in a regime of nematic binary interactions dominated by steric repulsion. The transition from a microscopic nematic symmetry to a macroscopic polar structure is linked to microscopic polarity sorting mechanisms, including accumulation in wedge-like topological defects. Our results should be instrumental for a better understanding of pattern formation and polarity sorting processes in active matter.</p><p class="para" id="N65539">Collective motion of active matter is ubiquitously observed, ranging from propelled colloids to flocks of bird, and often features the formation of complex structures composed of agents moving coherently. However, it remains extremely challenging to predict emergent patterns from the binary interaction between agents, especially as only a limited number of interaction regimes have been experimentally observed so far. Here, we introduce an actin gliding assay coupled to a supported lipid bilayer, whose fluidity forces the interaction between self-propelled filaments to be dominated by steric repulsion. This results in filaments stopping upon binary collisions and eventually aligning nematically. Such a binary interaction rule results at high densities in the emergence of dynamic collectively moving structures including clusters, vortices, and streams of filaments. Despite the microscopic interaction having a nematic symmetry, the emergent structures are found to be polar, with filaments collectively moving in the same direction. This is due to polar biases introduced by the stopping upon collision, both on the individual filaments scale as well as on the scale of collective structures. In this context, positive half-charged topological defects turn out to be a most efficient trapping and polarity sorting conformation.</p>]]></description>
            <pubDate><![CDATA[2021-02-03T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Enhancement and maximum in the isobaric specific-heat capacity measurements of deeply supercooled water using ultrafast calorimetry]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765998275478-e9dc2ad5-ef4f-47ec-a7f2-f3c8fc48e3ef/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2018379118</link>
            <description><![CDATA[<p class="para" id="N65542">The importance of molecular understanding of the structure, dynamics. and properties of liquid water is recognized in many scientific disciplines. Here, we study experimentally the structure and thermodynamics of bulk liquid water as it is supercooled by evaporation down to ∼228 K. The unique aspect of this work is the use of ultrafast calorimetry that enables us to determine the specific-heat capacity of water to unprecedentedly low temperatures. The observed maximum of about 218 J/mol/K at 229 K is consistent with the liquid–liquid critical point model and supports a proposed fragile-to-strong transition at ∼220 K to explain the steep decrease in the estimated self-diffusion coefficient below 235 K.</p><p class="para" id="N65539">Knowledge of the temperature dependence of the isobaric specific heat (C<sub>p</sub>) upon deep supercooling can give insights regarding the anomalous properties of water. If a maximum in C<sub>p</sub> exists at a specific temperature, as in the isothermal compressibility, it would further validate the liquid–liquid critical point model that can explain the anomalous increase in thermodynamic response functions. The challenge is that the relevant temperature range falls in the region where ice crystallization becomes rapid, which has previously excluded experiments. Here, we have utilized a methodology of ultrafast calorimetry by determining the temperature jump from femtosecond X-ray pulses after heating with an infrared laser pulse and with a sufficiently long time delay between the pulses to allow measurements at constant pressure. Evaporative cooling of ∼15-µm diameter droplets in vacuum enabled us to reach a temperature down to ∼228 K with a small fraction of the droplets remaining unfrozen. We observed a sharp increase in C<sub>p</sub>, from 88 J/mol/K at 244 K to about 218 J/mol/K at 229 K where a maximum is seen. The C<sub>p</sub> maximum is at a similar temperature as the maxima of the isothermal compressibility and correlation length. From the C<sub>p</sub> measurement, we estimated the excess entropy and self-diffusion coefficient of water and these properties decrease rapidly below 235 K.</p>]]></description>
            <pubDate><![CDATA[2021-02-01T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Giant spontaneous Hall effect in a nonmagnetic Weyl–Kondo semimetal]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765980299381-6989d9be-538f-4374-9d5d-8ddde7e61e1c/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2013386118</link>
            <description><![CDATA[<p class="para" id="N65542">States of matter are traditionally classified by their symmetry, as exemplified by the distinction between a solid and a liquid. Topological quantum phases, on the other hand, are harder to characterize, and still harder to identify. This is especially so in electronic systems with strong correlations. In this work, we uncover a purely electric-field-driven “giant” Hall response—orders of magnitude above expectation—in one such material and propose a mechanism whereby it is driven by strong correlations. Our results will enable the identification of electronic topological states in a broad range of strongly correlated quantum materials and may trigger efforts toward their exploitation in robust quantum electronics.</p><p class="para" id="N65539">Nontrivial topology in condensed-matter systems enriches quantum states of matter to go beyond either the classification into metals and insulators in terms of conventional band theory or that of symmetry-broken phases by Landau’s order parameter framework. So far, focus has been on weakly interacting systems, and little is known about the limit of strong electron correlations. Heavy fermion systems are a highly versatile platform to explore this regime. Here we report the discovery of a giant spontaneous Hall effect in the Kondo semimetal Ce3Bi4Pd3<div class="imageVideo"><img src="" alt=""/></div> that is noncentrosymmetric but preserves time-reversal symmetry. We attribute this finding to Weyl nodes—singularities of the Berry curvature—that emerge in the immediate vicinity of the Fermi level due to the Kondo interaction. We stress that this phenomenon is distinct from the previously detected anomalous Hall effect in materials with broken time-reversal symmetry; instead, it manifests an extreme topological response that requires a beyond-perturbation-theory description of the previously proposed nonlinear Hall effect. The large magnitude of the effect in even tiny electric and zero magnetic fields as well as its robust bulk nature may aid the exploitation in topological quantum devices.</p>]]></description>
            <pubDate><![CDATA[2021-02-19T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Anomalous vortex liquid in charge-ordered cuprate superconductors]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765903511164-bfe65694-76d4-4001-9d9f-0ec242cdc42c/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2016275118</link>
            <description><![CDATA[<p class="para" id="N65542">The magnetic-field scale at which superconducting vortices persist in underdoped cuprate superconductors has remained a controversial subject. Here we present an electrical transport study on three distinctly different cuprate families, at temperatures down to 0.32 K and magnetic fields up to 45 T. We reveal the presence of an anomalous vortex liquid state with a highly nonohmic resistivity in all three materials, irrespective of the level of disorder or structural details. The doping and field regime over which this anomalous vortex state persists suggests its occurrence is tied to the presence of long-range charge order under high magnetic field. Our results demonstrate that the intricate interplay between charge order and superconductivity can lead to an exotic vortex state.</p><p class="para" id="N65539">The interplay between charge order and d<div class="imageVideo"><img src="" alt=""/></div>-wave superconductivity in high-Tc<div class="imageVideo"><img src="" alt=""/></div> cuprates remains an open question. While mounting evidence from spectroscopic probes indicates that charge order competes with superconductivity, to date little is known about the impact of charge order on charge transport in the mixed state, when vortices are present. Here we study the low-temperature electrical resistivity of three distinctly different cuprate families under intense magnetic fields, over a broad range of hole doping and current excitations. We find that the electronic transport in the doping regime where long-range charge order is known to be present is characterized by a nonohmic resistivity, the identifying feature of an anomalous vortex liquid. The field and temperature range in which this nonohmic behavior occurs indicates that the presence of long-range charge order is closely related to the emergence of this anomalous vortex liquid, near a vortex solid boundary that is defined by the excitation current in the T→<div class="imageVideo"><img src="" alt=""/></div> 0 limit. Our findings further suggest that this anomalous vortex liquid, a manifestation of fragile superconductivity with a suppressed critical current density, is ubiquitous in the high-field state of charge-ordered cuprates.</p>]]></description>
            <pubDate><![CDATA[2021-02-12T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Neural network interpretation using descrambler groups]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765863754205-6fb5fa35-d62e-4af3-abc4-9eda4f026c5c/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2016917118</link>
            <description><![CDATA[<p class="para" id="N65542">Artificial neural networks are famously opaque—it is often unclear how they work. In this communication, we propose a group-theoretical way of finding out. It reveals considerable internal sophistication, even in simple neural networks: our nets apparently invented an elegant digital filter, a regularized integral transform, and even Chebyshev polynomials. This is a step toward saving reductionism. For centuries, the philosophical approach to science has been to find fundamental laws that govern reality, to test those laws, and to use their predictive power. Black-box neural networks amount to blasphemy within that school, but they are irresistible because they “just work.” Explaining how they work is a notoriously difficult problem, to which this paper offers a partial solution.</p><p class="para" id="N65539">The lack of interpretability and trust is a much-criticized feature of deep neural networks. In fully connected nets, the signaling between inner layers is scrambled because backpropagation training does not require perceptrons to be arranged in any particular order. The result is a black box; this problem is particularly severe in scientific computing and digital signal processing (DSP), where neural nets perform abstract mathematical transformations that do not reduce to features or concepts. We present here a group-theoretical procedure that attempts to bring inner-layer signaling into a human-readable form, the assumption being that this form exists and has identifiable and quantifiable features—for example, smoothness or locality. We applied the proposed method to DEERNet (a DSP network used in electron spin resonance) and managed to descramble it. We found considerable internal sophistication: the network spontaneously invents a bandpass filter, a notch filter, a frequency axis rescaling transformation, frequency-division multiplexing, group embedding, spectral filtering regularization, and a map from harmonic functions into Chebyshev polynomials—in 10 min of unattended training from a random initial guess.</p>]]></description>
            <pubDate><![CDATA[2021-01-26T00:00]]></pubDate>
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