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        <copyright>Newgen KnowledgeWorks</copyright>
        <item>
            <title><![CDATA[Mendelian randomization identifies blood metabolites previously linked to midlife cognition as causal candidates in Alzheimer’s disease]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766073151177-6bd63d02-4652-40b7-8c8d-0ad820b27e4b/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2009808118</link>
            <description><![CDATA[<p class="para" id="N65542">The absence of disease-modifying therapeutics for Alzheimer’s disease (AD) continues, and an understanding of early, easily accessible biomarkers to inform treatment strategies remains elusive. This study uses knowledge of blood metabolites previously associated with midlife cognition—a preclinical predictor of AD—to systematically investigate causal associations with later AD status. Given that the pathological changes underlying AD are thought to develop years before clinical manifestations of the disease, developing these findings further could hold special utility in informing early treatment intervention.</p><p class="para" id="N65539">There are currently no disease-modifying treatments for Alzheimer’s disease (AD), and an understanding of preclinical causal biomarkers to help target disease pathogenesis in the earliest phases remains elusive. Here, we investigated whether 19 metabolites previously associated with midlife cognition—a preclinical predictor of AD—translate to later clinical risk, using Mendelian randomization (MR) to tease out AD-specific causal relationships. Summary statistics from the largest genome-wide association studies (GWASs) for AD and metabolites were used to perform bidirectional univariable MR. Bayesian model averaging (BMA) was additionally performed to address high correlation between metabolites and identify metabolite combinations that may be on the AD causal pathway. Univariable MR indicated four extra-large high-density lipoproteins (XL.HDL) on the causal pathway to AD: free cholesterol (XL.HDL.FC: 95% CI = 0.78 to 0.94), total lipids (XL.HDL.L: 95% CI = 0.80 to 0.97), phospholipids (XL.HDL.PL: 95% CI = 0.81 to 0.97), and concentration of XL.HDL particles (95% CI = 0.79 to 0.96), significant at an adjusted <i>P</i> &lt; 0.009. MR–BMA corroborated XL.HDL.FC to be among the top three causal metabolites, in addition to total cholesterol in XL.HDL (XL.HDL.C) and glycoprotein acetyls (GP). Both XL.HDL.C and GP demonstrated suggestive univariable evidence of causality (<i>P</i> &lt; 0.05), and GP successfully replicated within an independent dataset. This study offers insight into the causal relationship between metabolites demonstrating association with midlife cognition and AD. It highlights GP in addition to several XL.HDLs—particularly XL.HDL.FC—as causal candidates warranting further investigation. As AD pathology is thought to develop decades prior to symptom onset, expanding on these findings could inform risk reduction strategies.</p>]]></description>
            <pubDate><![CDATA[2021-04-16T00:00]]></pubDate>
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            <title><![CDATA[Regulation of longevity by depolarization-induced activation of PLC-β–IP<sub>3</sub>R signaling in neurons]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766072840097-f0060cdf-7de0-4fa4-bb5e-a1ff3c8ca5c3/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2004253118</link>
            <description><![CDATA[<p class="para" id="N65542">We demonstrate that depolarization of <i>Drosophila</i> glutamatergic neurons augmented inositol trisphosphate receptor (IP<sub>3</sub>R)-dependent release of endoplasmic reticulum (ER) Ca<sup>2+</sup>, which in turn potentiated mitochondrial Ca<sup>2+</sup> uptake and ATP production. Perturbations that induced chronic depolarization, including the expression of neurodegeneration-related transgenes, led to the diversion of released ER Ca<sup>2+</sup> into lysosomes and an attendant shortening of animal lifespan. Thus, genetic disruption of PLC-β–IP<sub>3</sub>R signaling or lysosomal Ca<sup>2+</sup> uptake restored longevity in animals with chronically depolarized glutamatergic neurons. Our findings point to aberrant Ca<sup>2+</sup> signaling between the ER and lysosomes as a mechanism by which hyperexcitable glutamatergic neurons shorten animal lifespan.</p><p class="para" id="N65539">Mitochondrial ATP production is a well-known regulator of neuronal excitability. The reciprocal influence of plasma-membrane potential on ATP production, however, remains poorly understood. Here, we describe a mechanism by which depolarized neurons elevate the somatic ATP/ADP ratio in <i>Drosophila</i> glutamatergic neurons. We show that depolarization increased phospholipase-Cβ (PLC-β) activity by promoting the association of the enzyme with its phosphoinositide substrate. Augmented PLC-β activity led to greater release of endoplasmic reticulum Ca<sup>2+</sup> via the inositol trisphosphate receptor (IP<sub>3</sub>R), increased mitochondrial Ca<sup>2+</sup> uptake, and promoted ATP synthesis. Perturbations that decoupled membrane potential from this mode of ATP synthesis led to untrammeled PLC-β–IP<sub>3</sub>R activation and a dramatic shortening of <i>Drosophila</i> lifespan. Upon investigating the underlying mechanisms, we found that increased sequestration of Ca<sup>2+</sup> into endolysosomes was an intermediary in the regulation of lifespan by IP<sub>3</sub>Rs. Manipulations that either lowered PLC-β/IP<sub>3</sub>R abundance or attenuated endolysosomal Ca<sup>2+</sup> overload restored animal longevity. Collectively, our findings demonstrate that depolarization-dependent regulation of PLC-β–IP<sub>3</sub>R signaling is required for modulation of the ATP/ADP ratio in healthy glutamatergic neurons, whereas hyperactivation of this axis in chronically depolarized glutamatergic neurons shortens animal lifespan by promoting endolysosomal Ca<sup>2+</sup> overload.</p>]]></description>
            <pubDate><![CDATA[2021-04-15T00:00]]></pubDate>
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            <title><![CDATA[Functional connectome fingerprinting using shallow feedforward neural networks]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766061273772-58f4df1c-f6f9-4e6f-8284-ccfb0981d88d/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2021852118</link>
            <description><![CDATA[<p class="para" id="N65539">Although individual subjects can be identified with high accuracy using correlation matrices computed from resting-state functional MRI (rsfMRI) data, the performance significantly degrades as the scan duration is decreased. Recurrent neural networks can achieve high accuracy with short-duration (72 s) data segments but are designed to use temporal features not present in the correlation matrices. Here we show that shallow feedforward neural networks that rely solely on the information in rsfMRI correlation matrices can achieve state-of-the-art identification accuracies (≥99.5%<div class="imageVideo"><img src="" alt=""/></div>) with data segments as short as 20 s and across a range of input data size combinations when the total number of data points (number of regions ×<div class="imageVideo"><img src="" alt=""/></div> number of time points) is on the order of 10,000<div class="imageVideo"><img src="" alt=""/></div>.</p>]]></description>
            <pubDate><![CDATA[2021-04-07T00:00]]></pubDate>
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            <title><![CDATA[A neural circuit for competing approach and defense underlying prey capture]]></title>
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            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2013411118</link>
            <description><![CDATA[<p class="para" id="N65542">Predatory hunting involves measured risk taking by the predator to anticipate dangerous defensive behavior from prey. This involves a mechanism where the motivation to hunt can overcome defensive behaviors toward prey to unlock attack. Here, we found that activation of a subset of GABAergic neurons in the lateral hypothalamus (LHA) promotes hunting but not feeding behavior. Stimulation of projections of these neurons to the periaqueductal gray (PAG), an area known to trigger defensive behaviors, decreased avoidance of prey. Single neuron recording during exposure to prey revealed two distinct PAG neuronal populations encoding risk assessment and flight. We conclude that in male mice, LHA GABAergic neurons are involved in blocking defensive behavior encoded in the PAG to overcome fear of prey.</p><p class="para" id="N65539">Predators must frequently balance competing approach and defensive behaviors elicited by a moving and potentially dangerous prey. Several brain circuits supporting predation have recently been localized. However, the mechanisms by which these circuits balance the conflict between approach and defense responses remain unknown. Laboratory mice initially show alternating approach and defense responses toward cockroaches, a natural prey, but with repeated exposure become avid hunters. Here, we used in vivo neural activity recording and cell-type specific manipulations in hunting male mice to identify neurons in the lateral hypothalamus and periaqueductal gray that encode and control predatory approach and defense behaviors. We found a subset of GABAergic neurons in lateral hypothalamus that specifically encoded hunting behaviors and whose stimulation triggered predation but not feeding. This population projects to the periaqueductal gray, and stimulation of these projections promoted predation. Neurons in periaqueductal gray encoded both approach and defensive behaviors but only initially when the mouse showed high levels of fear of the prey. Our findings allow us to propose that GABAergic neurons in lateral hypothalamus facilitate predation in part by suppressing defensive responses to prey encoded in the periaqueductal gray. Our results reveal a neural circuit mechanism for controlling the balance between conflicting approach and defensive behaviors elicited by the same stimulus.</p>]]></description>
            <pubDate><![CDATA[2021-04-05T00:00]]></pubDate>
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            <title><![CDATA[Melanocortin 3 receptor-expressing neurons in the ventromedial hypothalamus promote glucose disposal]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766060085566-60d6a8a1-6262-4e3c-bbf3-4714986994ba/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2103090118</link>
            <description><![CDATA[<p class="para" id="N65539">The ventromedial hypothalamus (VMH) is a critical neural node that senses blood glucose and promotes glucose utilization or mobilization during hypoglycemia. The VMH neurons that control these distinct physiologic processes are largely unknown. Here, we show that melanocortin 3 receptor (<i>Mc3R</i>)-expressing VMH neurons (VMH<sup>MC3R</sup>) sense glucose changes both directly and indirectly via altered excitatory input. We identify presynaptic nodes that potentially regulate VMH<sup>MC3R</sup> neuronal activity, including inputs from proopiomelanocortin (POMC)-producing neurons in the arcuate nucleus. We find that VMH<sup>MC3R</sup> neuron activation blunts, and their silencing enhances glucose excursion following a glucose load. Overall, these findings demonstrate that VMH<sup>MC3R</sup> neurons are a glucose-responsive hypothalamic subpopulation that promotes glucose disposal upon activation; this highlights a potential site for targeting dysregulated glycemia.</p>]]></description>
            <pubDate><![CDATA[2021-04-07T00:00]]></pubDate>
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            <title><![CDATA[Presynaptic α<sub>2</sub>δ subunits are key organizers of glutamatergic synapses]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766030859992-f9ddf33f-5b05-4598-85e2-7e0a48bb3f95/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.1920827118</link>
            <description><![CDATA[<p class="para" id="N65542">Voltage-gated calcium channels are important regulators of neuronal functions, as for example synaptic transmission. Their auxiliary α<sub>2</sub>δ subunits are modulating the calcium currents. Beyond that they have emerged as modulators of synaptic functions. Here, we established a cellular triple knockout/knockdown model in cultured hippocampal neurons by knocking out or knocking down the expression of all three α<sub>2</sub>δ subunits expressed in brain. Our experiments demonstrate that the presynaptic loss of α<sub>2</sub>δ proteins leads to a severe defect in glutamatergic synapse formation, which could be rescued by reintroducing any of the three neuronal α<sub>2</sub>δ isoforms. Thus, our study suggests that α<sub>2</sub>δ proteins are critical regulators of excitatory synapse formation and thereby contributes to the understanding of basic nerve cell functions.</p><p class="para" id="N65539">In nerve cells the genes encoding for α<sub>2</sub>δ subunits of voltage-gated calcium channels have been linked to synaptic functions and neurological disease. Here we show that α<sub>2</sub>δ subunits are essential for the formation and organization of glutamatergic synapses. Using a cellular α<sub>2</sub>δ subunit triple-knockout/knockdown model, we demonstrate a failure in presynaptic differentiation evidenced by defective presynaptic calcium channel clustering and calcium influx, smaller presynaptic active zones, and a strongly reduced accumulation of presynaptic vesicle-associated proteins (synapsin and vGLUT). The presynaptic defect is associated with the downscaling of postsynaptic AMPA receptors and the postsynaptic density. The role of α<sub>2</sub>δ isoforms as synaptic organizers is highly redundant, as each individual α<sub>2</sub>δ isoform can rescue presynaptic calcium channel trafficking and expression of synaptic proteins. Moreover, α<sub>2</sub>δ-2 and α<sub>2</sub>δ-3 with mutated metal ion-dependent adhesion sites can fully rescue presynaptic synapsin expression but only partially calcium channel trafficking, suggesting that the regulatory role of α<sub>2</sub>δ subunits is independent from its role as a calcium channel subunit. Our findings influence the current view on excitatory synapse formation. First, our study suggests that postsynaptic differentiation is secondary to presynaptic differentiation. Second, the dependence of presynaptic differentiation on α<sub>2</sub>δ implicates α<sub>2</sub>δ subunits as potential nucleation points for the organization of synapses. Finally, our results suggest that α<sub>2</sub>δ subunits act as transsynaptic organizers of glutamatergic synapses, thereby aligning the synaptic active zone with the postsynaptic density.</p>]]></description>
            <pubDate><![CDATA[2021-03-29T00:00]]></pubDate>
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            <title><![CDATA[Network dynamics of hypothalamic feeding neurons]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766030534738-8ce7485b-88b4-4144-9131-d9fcfca8a62d/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2011140118</link>
            <description><![CDATA[<p class="para" id="N65542">Paraventricular nucleus (PVN) neurons expressing the melanocortin 4 receptor (MC4R) integrate hormonal and neuronal information concerning energy availability and engage neural circuitry controlling feeding, metabolism, and neuroendocrine function in response to changes in body weight and stored energy. Thereby, the dynamic activity of PVN MC4R neurons may serve as a neural representation of body weight “set point.” Here, we demonstrate that PVN MC4R neuronal activity is bidirectionally regulated by changes in energy state, as neuronal activity is gradually suppressed during fasting and increased in response to refeeding. Together, these findings provide a framework for understanding how hunger and satiety are controlled within critical neurons involved in energy homeostasis.</p><p class="para" id="N65539">Mutations in the melanocortin 4 receptor (MC4R) result in hyperphagia and obesity and are the most common cause of monogenic obesity in humans. Preclinical rodent studies have determined that the critical role of the MC4R in controlling feeding can be mapped in part to its expression in the paraventricular nucleus of the hypothalamus (paraventricular nucleus [PVN]), where it regulates the activity of anorexic neural circuits. Despite the critical role of PVN MC4R neurons in regulating feeding, the in vivo neuronal activity of these cells remains largely unstudied, and the network activity of PVN MC4R neurons has not been determined. Here, we utilize in vivo single-cell endomicroscopic and mathematical approaches to determine the activity and network dynamics of PVN MC4R neurons in response to changes in energy state and pharmacological manipulation of central melanocortin receptors. We determine that PVN MC4R neurons exhibit both quantitative and qualitative changes in response to fasting and refeeding. Pharmacological stimulation of MC4R with the therapeutic MC4R agonist setmelanotide rapidly increases basal PVN MC4R activity, while stimulation of melanocortin 3 receptor (MC3R) inhibits PVN MC4R activity. Finally, we find that distinct PVN MC4R neuronal ensembles encode energy deficit and energy surfeit and that energy surfeit is associated with enhanced network connections within PVN MC4R neurons. These findings provide valuable insight into the neural dynamics underlying hunger and energy surfeit.</p>]]></description>
            <pubDate><![CDATA[2021-04-01T00:00]]></pubDate>
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            <title><![CDATA[The CysLT<sub>2</sub>R receptor mediates leukotriene C<sub>4</sub>-driven acute and chronic itch]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766005520448-571fb5fa-5095-4745-be11-127bed4184e7/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2022087118</link>
            <description><![CDATA[<p class="para" id="N65542">Interactions between the nervous system and immune system are central regulators of chronic itch, a key feature of pathologies like atopic dermatitis and allergic contact dermatitis. Cysteinyl leukotrienes (LTC<sub>4</sub>, LTD<sub>4</sub>, and LTE<sub>4</sub>) are eicosanoid lipids known for mediating inflammation, bronchoconstriction, and vascular leakage. We demonstrate here that CysLTs are potent itch inducers and that this effect depends on the specific coupling of LTC<sub>4</sub> with its receptor CysLT<sub>2</sub>R, which is expressed in a population of peripheral sensory neurons in the mouse and in human. We show that the LTC<sub>4</sub>/CysLT<sub>2</sub>R pathway contributes to a model of chronic itch, suggesting that CysLT<sub>2</sub>R could be a new therapeutic target for intractable chronic itch.</p><p class="para" id="N65539">Acute and chronic itch are burdensome manifestations of skin pathologies including allergic skin diseases and atopic dermatitis, but the underlying molecular mechanisms are not well understood. Cysteinyl leukotrienes (CysLTs), comprising LTC<sub>4</sub>, LTD<sub>4</sub>, and LTE<sub>4</sub>, are produced by immune cells during type 2 inflammation. Here, we uncover a role for LTC<sub>4</sub> and its signaling through the CysLT receptor 2 (CysLT<sub>2</sub>R) in itch. <i>Cysltr2</i> transcript is highly expressed in dorsal root ganglia (DRG) neurons linked to itch in mice. We also detected <i>CYSLTR2</i> in a broad population of human DRG neurons. Injection of leukotriene C<sub>4</sub> (LTC<sub>4</sub>) or its nonhydrolyzable form NMLTC<sub>4</sub>, but neither LTD<sub>4</sub> nor LTE<sub>4</sub>, induced dose-dependent itch but not pain behaviors in mice. LTC<sub>4</sub>-mediated itch differed in bout duration and kinetics from pruritogens histamine, compound 48/80, and chloroquine. NMLTC<sub>4</sub>-induced itch was abrogated in mice deficient for <i>Cysltr2</i> or when deficiency was restricted to radioresistant cells. Itch was unaffected in mice deficient for <i>Cysltr1</i>, <i>Trpv1</i>, or mast cells (W<sup>Sh</sup> mice). CysLT<sub>2</sub>R played a role in itch in the MC903 mouse model of chronic itch and dermatitis, but not in models of dry skin or compound 48/80- or <i>Alternaria</i>-induced itch. In MC903-treated mice, CysLT levels increased in skin over time, and <i>Cysltr2</i><sup>−/−</sup> mice showed decreased itch in the chronic phase of inflammation. Collectively, our study reveals that LTC<sub>4</sub> acts through CysLT<sub>2</sub>R as its physiological receptor to induce itch, and CysLT<sub>2</sub>R contributes to itch in a model of dermatitis. Therefore, targeting CysLT signaling may be a promising approach to treat inflammatory itch.</p>]]></description>
            <pubDate><![CDATA[2021-03-22T00:00]]></pubDate>
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            <title><![CDATA[GFAP hyperpalmitoylation exacerbates astrogliosis and neurodegenerative pathology in PPT1-deficient mice]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766005097552-4f424034-b26c-4ef2-b03b-ad146d9ff692/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2022261118</link>
            <description><![CDATA[<p class="para" id="N65542">This study reports that the intermediate filament protein GFAP is modified with protein palmitoylation. Increased GFAP expression and palmitoylation is involved in astrocyte proliferation and astrogliosis. We demonstrate that GFAP palmitoylation is regulated by PPT1, a palmitoylprotein thioesterase linked to a childhood neurodegenerative disorder, infantile neuronal ceroid lipofuscinosis. A palmitoylation-defective mutant of GFAP attenuates astrogliosis and the concurrent pathology in a loss-of-function PPT1 mouse. We conclude that accumulation of palmitoylated GFAP contributes to the pathogenesis of astrogliosis and neurodegeneration, suggesting that targeting the modified cysteine in GFAP may be a potential therapeutic strategy for the treatment of infantile neuronal ceroid lipofuscinosis and other neurodegenerative disorders.</p><p class="para" id="N65539">The homeostasis of protein palmitoylation and depalmitoylation is essential for proper physiological functions in various tissues, in particular the central nervous system (CNS). The dysfunction of PPT1 (PPT1-KI, infantile neuronal ceroid lipofuscinosis [INCL] mouse model), which catalyze the depalmitoylation process, results in serious neurodegeneration accompanied by severe astrogliosis in the brain. Endeavoring to determine critical factors that might account for the pathogenesis in CNS by palm-proteomics, glial fibrillary acidic protein (GFAP) was spotted, indicating that GFAP is probably palmitoylated. Questions concerning if GFAP is indeed palmitoylated in vivo and how palmitoylation of GFAP might participate in neural pathology remain unexplored and are waiting to be investigated. Here we show that GFAP is readily palmitoylated in vitro and in vivo; specifically, cysteine-291 is the unique palmitoylated residue in GFAP. Interestingly, it was found that palmitoylated GFAP promotes astrocyte proliferation in vitro. Furthermore, we showed that PPT1 depalmitoylates GFAP, and the level of palmitoylated GFAP is overwhelmingly up-regulated in PPT1-knockin mice, which lead us to speculate that the elevated level of palmitoylated GFAP might accelerate astrocyte proliferation in vivo and ultimately led to astrogliosis in INCL. Indeed, blocking palmitoylation by mutating cysteine-291 into alanine in GFAP attenuate astrogliosis, and remarkably, the concurrent neurodegenerative pathology in PPT1-knockin mice. Together, these findings demonstrate that hyperpalmitoylated GFAP plays critical roles in regulating the pathogenesis of astrogliosis and neurodegeneration in the CNS, and most importantly, pinpointing that cysteine-291 in GFAP might be a valuable pharmaceutical target for treating INCL and other potential neurodegenerative diseases.</p>]]></description>
            <pubDate><![CDATA[2021-03-22T00:00]]></pubDate>
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            <title><![CDATA[Differential regulation of local mRNA dynamics and translation following long-term potentiation and depression]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766004940522-3ed775b3-5218-417b-a26b-f23e4c880317/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2017578118</link>
            <description><![CDATA[<p class="para" id="N65542">Local protein synthesis is important for neuronal function and synaptic plasticity. Thousands of mRNAs are found in axons and dendrites, and it is believed that regulating their dynamic transport and distribution is a key determinant of where and when proteins are made. In this work we quantitatively assessed the dynamic transport of three synaptically localized mRNAs in live cultured neurons without exogenous stimulation and following induction of two distinct forms of synaptic plasticity. Coupling observations of mRNA dynamics with live imaging of endogenous protein synthesis dynamics, we found that alterations in mRNA movements occur independently of their translational state, indicating a multistep mechanism of capture and decoding of an mRNA to determine when translation occurs.</p><p class="para" id="N65539">Decades of work have demonstrated that messenger RNAs (mRNAs) are localized and translated within neuronal dendrites and axons to provide proteins for remodeling and maintaining growth cones or synapses. It remains unknown, however, whether specific forms of plasticity differentially regulate the dynamics and translation of individual mRNA species. To address this, we targeted three individual synaptically localized mRNAs, <i>CamkIIa</i>, <i>β-actin</i>, <i>Psd95,</i> and used molecular beacons to track endogenous mRNA movements. We used reporters and CRISPR/Cas9 gene editing to track mRNA translation in cultured neurons. We found alterations in mRNA dynamic properties occurred during two forms of synaptic plasticity, long-term potentiation (cLTP) and depression (mGluR-LTD). Changes in mRNA dynamics following either form of plasticity resulted in an enrichment of mRNA in the vicinity of dendritic spines. Both the reporters and tagging of endogenous proteins revealed the transcript-specific stimulation of protein synthesis following cLTP or mGluR-LTD. As such, the plasticity-induced enrichment of mRNA near synapses could be uncoupled from its translational status. The enrichment of mRNA in the proximity of spines allows for localized signaling pathways to decode plasticity milieus and stimulate a specific translational profile, resulting in a customized remodeling of the synaptic proteome.</p>]]></description>
            <pubDate><![CDATA[2021-03-26T00:00]]></pubDate>
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            <title><![CDATA[<i>Drosophila</i> Fezf functions as a transcriptional repressor to direct layer-specific synaptic connectivity in the fly visual system]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766004697806-4ece912a-395a-4380-bb38-7da1b4b491d2/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2025530118</link>
            <description><![CDATA[<p class="para" id="N65542">Functionally relevant neuronal connections are often organized within discrete layers of neuropil to ensure proper connectivity and information processing. While layer-specific assembly of neuronal connectivity is a dynamic process involving stepwise interactions between different neuron types, the mechanisms underlying this critical developmental process are not well understood. Here, we investigate the role of the transcription factor dFezf in layer selection within the <i>Drosophila</i> visual system, which is important for synaptic specificity. Our findings show that dFezf functions as a transcriptional repressor governing the precise temporal expression pattern of downstream genes, including other transcription factors required for proper connectivity. Layer-specific assembly of neuronal connectivity in the fly visual system is thus orchestrated by precise, temporally controlled transcriptional cascades.</p><p class="para" id="N65539">The layered compartmentalization of synaptic connections, a common feature of nervous systems, underlies proper connectivity between neurons and enables parallel processing of neural information. However, the stepwise development of layered neuronal connections is not well understood. The medulla neuropil of the <i>Drosophila</i> visual system, which comprises 10 discrete layers (M1 to M10), where neural computations underlying distinct visual features are processed, serves as a model system for understanding layered synaptic connectivity. The first step in establishing layer-specific connectivity in the outer medulla (M1 to M6) is the innervation by lamina (L) neurons of one of two broad, primordial domains that will subsequently expand and transform into discrete layers. We previously found that the transcription factor dFezf cell-autonomously directs L3 lamina neurons to their proper primordial broad domain before they form synapses within the developing M3 layer. Here, we show that dFezf controls L3 broad domain selection through temporally precise transcriptional repression of the transcription factor <i>slp1</i> (sloppy paired 1). In wild-type L3 neurons, <i>slp1</i> is transiently expressed at a low level during broad domain selection. When <i>dFezf</i> is deleted, <i>slp1</i> expression is up-regulated, and ablation of <i>slp1</i> fully rescues the defect of broad domain selection in <i>dFezf</i>-null L3 neurons. Although the early, transient expression of <i>slp1</i> is expendable for broad domain selection, it is surprisingly necessary for the subsequent L3 innervation of the M3 layer. DFezf thus functions as a transcriptional repressor to coordinate the temporal dynamics of a transcriptional cascade that orchestrates sequential steps of layer-specific synapse formation.</p>]]></description>
            <pubDate><![CDATA[2021-03-25T00:00]]></pubDate>
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            <title><![CDATA[Restriction of food intake by PPP1R17-expressing neurons in the DMH]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766004650100-496cf350-c6a5-4fdd-9405-8506aa17d0d2/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2100194118</link>
            <description><![CDATA[<p class="para" id="N65542">We set out to identify novel neuronal populations controlling feeding behaviors. Therefore, we focused on identifying novel neuronal populations modulating food intake and body weight. In this article, we report that DMH<sup>Ppp1r17</sup> neurons are activated by increased food intake and that activating them results in decreased food intake and body weight, while inhibiting them leads to increased body weight and food intake. These data suggest that DMH<sup>Ppp1r17</sup> neurons restrict binges of eating. In addition to its basic science importance, these findings could have therapeutic applications, as they suggest that pharmacologic activation of PPP1R17 neurons could potentially reduce weight in settings of obesity and binge-like eating.</p><p class="para" id="N65539">Leptin-deficient ob/ob mice eat voraciously, and their food intake is markedly reduced by leptin treatment. In order to identify potentially novel sites of leptin action, we used PhosphoTRAP to molecularly profile leptin-responsive neurons in the hypothalamus and brainstem. In addition to identifying several known leptin responsive populations, we found that neurons in the dorsomedial hypothalamus (DMH) of ob/ob mice expressing protein phosphatase 1 regulatory subunit 17 (PPP1R17) constitutively express cFos and that this is suppressed by leptin treatment. Because ob mice are hyperphagic, we hypothesized that activating PPP1R17 neurons would increase food intake. However, chemogenetic activation of PPP1R17 neurons decreased food intake and body weight of ob/ob mice while inhibition of PPP1R17 neurons increased them. Similarly, in a scheduled feeding protocol that elicits increased consumption, mice also ate more when PPP1R17 neurons were inhibited and ate less when they were activated. Finally, we found that pair-feeding of ob mice reduced cFos expression to a similar extent as leptin and that reducing the amount of food available during scheduled feeding in DMH<sup>Ppp1r17</sup> neurons also decreased cFos in DMH<sup>Ppp1r17</sup> neurons. Finally, these neurons do not express the leptin receptor, suggesting that the effect of leptin on these neurons is indirect and secondary to reduced food intake. In aggregate, these results show that PPP1R17 neurons in the DMH are activated by increased food intake and in turn restrict intake to limit overconsumption, suggesting that they function to constrain binges of eating.</p>]]></description>
            <pubDate><![CDATA[2021-03-22T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Ultrasound activates mechanosensitive TRAAK K<sup>+</sup> channels through the lipid membrane]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1766001586441-2772c1b2-3d4a-480b-8718-24292907c22b/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2006980118</link>
            <description><![CDATA[<p class="para" id="N65542">Ultrasound stimulation modulates the electrical activity of excitable cells, including in neurons of the brain and central nervous system. Compared to other neuromodulatory techniques, ultrasound offers several advantages; for example, it can be noninvasively transmitted through the skull and focused to deep brain regions. However, the molecular basis underlying the effects of ultrasound on neural activity is not known. Here, we show that ultrasound activates the mechanosensitive ion channel TRAAK through the membrane in a manner analogous to canonical mechanical activation, likely by increasing membrane tension to promote channel opening. These results suggest mechanosensitive channels underlie physiological responses to ultrasound and could serve as tools for acoustic neuromodulation of genetically targeted cells.</p><p class="para" id="N65539">Ultrasound modulates the electrical activity of excitable cells and offers advantages over other neuromodulatory techniques; for example, it can be noninvasively transmitted through the skull and focused to deep brain regions. However, the fundamental cellular, molecular, and mechanistic bases of ultrasonic neuromodulation are largely unknown. Here, we demonstrate ultrasound activation of the mechanosensitive K<sup>+</sup> channel TRAAK with submillisecond kinetics to an extent comparable to canonical mechanical activation. Single-channel recordings reveal a common basis for ultrasonic and mechanical activation with stimulus-graded destabilization of long-duration closures and promotion of full conductance openings. Ultrasonic energy is transduced to TRAAK through the membrane in the absence of other cellular components, likely increasing membrane tension to promote channel opening. We further demonstrate ultrasonic modulation of neuronally expressed TRAAK. These results suggest mechanosensitive channels underlie physiological responses to ultrasound and could serve as sonogenetic actuators for acoustic neuromodulation of genetically targeted cells.</p>]]></description>
            <pubDate><![CDATA[2021-02-04T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[A dark quencher genetically encodable voltage indicator (dqGEVI) exhibits high fidelity and speed]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765999351867-b1fa2d61-582a-44d6-864c-475371a07f2e/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2020235118</link>
            <description><![CDATA[<p class="para" id="N65542">Voltage sensing with genetically expressed optical probes is highly desirable for large-scale recordings of neuronal activity and detection of localized voltage signals in single neurons. Here we describe a method for a two-component (hybrid) genetically encodable fluorescent voltage sensing in neurons. The approach uses a glycosylphosphatidylinositol-tagged fluorescent protein (enhanced green fluorescent protein) that ensures the fluorescence to be specifically confined to the outside of the plasma membrane and D3, a voltage-dependent quencher. Previous hybrid genetically encoded voltage sensing approaches relied on a single quenching molecule, dipycrilamine (DPA), which is toxic, increases membrane capacitance, interferes with neurotransmitters, and is explosive. Our method uses a nontoxic and nonexplosive compound that performs better than DPA in all aspects of fluorescent voltage sensing.</p><p class="para" id="N65539">Voltage sensing with genetically expressed optical probes is highly desirable for large-scale recordings of neuronal activity and detection of localized voltage signals in single neurons. Most genetically encodable voltage indicators (GEVI) have drawbacks including slow response, low fluorescence, or excessive bleaching. Here we present a dark quencher GEVI approach (dqGEVI) using a Förster resonance energy transfer pair between a fluorophore glycosylphosphatidylinositol–enhanced green fluorescent protein (GPI-eGFP) on the outer surface of the neuronal membrane and an azo-benzene dye quencher (D3) that rapidly moves in the membrane driven by voltage. In contrast to previous probes, the sensor has a single photon bleaching time constant of ∼40 min, has a high temporal resolution and fidelity for detecting action potential firing at 100 Hz, resolves membrane de- and hyperpolarizations of a few millivolts, and has negligible effects on passive membrane properties or synaptic events. The dqGEVI approach should be a valuable tool for optical recordings of subcellular or population membrane potential changes in nerve cells.</p>]]></description>
            <pubDate><![CDATA[2021-02-02T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[An mtDNA mutant mouse demonstrates that mitochondrial deficiency can result in autism endophenotypes]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765998445748-40f5ce28-46aa-4e3e-a826-94ea74510319/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2021429118</link>
            <description><![CDATA[<p class="para" id="N65542">Autism spectrum disorders (ASDs) have increasingly been associated with mitochondrial dysfunction, corroborated by mitochondrial DNA (mtDNA) germline and somatic variants being found in ASD patients. If mitochondrial defects can generate ASD, then specific mtDNA mutations should induce ASD endophenotypes in mice. We tested this prediction by introduction of an mtDNA <i>ND6 </i>gene missense mutation (<i>ND6<sup>P25L</sup></i>) into the mouse germline and found ASD endophenotypes. The <i>ND6<sup>P25L</sup></i> mice exhibit impaired social interaction, compulsive behavior, and increased anxiety. They have reduced electroencephalographic delta and theta wave power, increased predilection to seizures, but without diminution of hippocampal interneurons. These endophenotypes correlate with impaired cortical and hippocampal mitochondrial respiration and increased reactive oxygen species production. Thus, mitochondrial defects can be sufficient to produce ASD phenotypes.</p><p class="para" id="N65539">Autism spectrum disorders (ASDs) are characterized by a deficit in social communication, pathologic repetitive behaviors, restricted interests, and electroencephalogram (EEG) aberrations. While exhaustive analysis of nuclear DNA (nDNA) variation has revealed hundreds of copy number variants (CNVs) and loss-of-function (LOF) mutations, no unifying hypothesis as to the pathophysiology of ASD has yet emerged. Based on biochemical and physiological analyses, it has been hypothesized that ASD may be the result of a systemic mitochondrial deficiency with brain-specific manifestations. This proposal has been supported by recent mitochondrial DNA (mtDNA) analyses identifying both germline and somatic mtDNA variants in ASD. If mitochondrial defects do predispose to ASD, then mice with certain mtDNA mutations should present with autism endophenotypes. To test this prediction, we examined a mouse strain harboring an mtDNA <i>ND6</i> gene missense mutation (P25L). This mouse manifests impaired social interactions, increased repetitive behaviors and anxiety, EEG alterations, and a decreased seizure threshold, in the absence of reduced hippocampal interneuron numbers. EEG aberrations were most pronounced in the cortex followed by the hippocampus. Aberrations in mitochondrial respiratory function and reactive oxygen species (ROS) levels were also most pronounced in the cortex followed by the hippocampus, but absent in the olfactory bulb. These data demonstrate that mild systemic mitochondrial defects can result in ASD without apparent neuroanatomical defects and that systemic mitochondrial mutations can cause tissue-specific brain defects accompanied by regional neurophysiological alterations.</p>]]></description>
            <pubDate><![CDATA[2021-02-03T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[SOX9-COL9A3–dependent regulation of choroid plexus epithelial polarity governs blood–cerebrospinal fluid barrier integrity]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765996398036-d06594d3-5a8d-4bd1-bd1a-385586f90e63/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2009568118</link>
            <description><![CDATA[<p class="para" id="N65542">Tight regulation of the brain microenvironment is fundamental to proper neurologic function. The restriction of molecule entry into the central nervous system from the brain vascular endothelium has been well studied; however, far less is known about the molecular events that control permeability across the choroid plexus (CP) epithelium at the interface between the systemic circulation and cerebrospinal fluid (CSF). Our study establishes an essential role for SOX9 in the regulation of CP permeability. SOX9 induces the transcription of <i>Col9a3</i>, which mediates the microtubule dynamics necessary for orienting cell polarity and thereby assembling epithelial tight junctions. Our findings lay the groundwork for the manipulation of blood–CSF barrier permeability and expand our understanding of epithelial tissue integrity.</p><p class="para" id="N65539">The choroid plexus (CP) is an extensively vascularized neuroepithelial tissue that projects into the brain ventricles. The restriction of transepithelial transport across the CP establishes the blood–cerebrospinal fluid (CSF) barrier that is fundamental to the homeostatic regulation of the central nervous system microenvironment. However, the molecular mechanisms that control this process remain elusive. Here we show that the genetic ablation of <i>Sox9</i> in the hindbrain CP results in a hyperpermeable blood–CSF barrier that ultimately upsets the CSF electrolyte balance and alters CSF protein composition. Mechanistically, SOX9 is required for the transcriptional up-regulation of <i>Col9a3</i> in the CP epithelium. The reduction of <i>Col9a3</i> expression dramatically recapitulates the blood–CSF barrier defects of <i>Sox9</i> mutants. Loss of collagen IX severely disrupts the structural integrity of the epithelial basement membrane in the CP, leading to progressive loss of extracellular matrix components. Consequently, this perturbs the polarized microtubule dynamics required for correct orientation of apicobasal polarity and thereby impedes tight junction assembly in the CP epithelium. Our findings reveal a pivotal cascade of SOX9-dependent molecular events that is critical for construction of the blood–CSF barrier.</p>]]></description>
            <pubDate><![CDATA[2021-02-01T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[TIA1 potentiates tau phase separation and promotes generation of toxic oligomeric tau]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765991742757-64ea54b0-5487-44f9-95b0-e5ef74f76c22/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2014188118</link>
            <description><![CDATA[<p class="para" id="N65542">Phase separation of proteins is increasingly thought to play a fundamental role in biological processes. Recent studies show that tau protein phase separates, but the biological significance is unknown since artificial crowding agents are typically used and the resulting tau is not toxic. We now demonstrate that TIA1 potentiates RNA-mediated phase separation of tau, thereby enabling a process that occurs at physiological concentrations and also directs the formation of biologically active, highly neurotoxic oligomeric tau. Coordinated phase separation of functionally related proteins provides a general mechanism through which membraneless organelles can direct biological activities.</p><p class="para" id="N65539">Tau protein plays an important role in the biology of stress granules and in the stress response of neurons, but the nature of these biochemical interactions is not known. Here we show that the interaction of tau with RNA and the RNA binding protein TIA1 is sufficient to drive phase separation of tau at physiological concentrations, without the requirement for artificial crowding agents such as polyethylene glycol (PEG). We further show that phase separation of tau in the presence of RNA and TIA1 generates abundant tau oligomers. Prior studies indicate that recombinant tau readily forms oligomers and fibrils in vitro in the presence of polyanionic agents, including RNA, but the resulting tau aggregates are not particularly toxic. We discover that tau oligomers generated during copartitioning with TIA1 are significantly more toxic than tau aggregates generated by incubation with RNA alone or phase-separated tau complexes generated by incubation with artificial crowding agents. This pathway identifies a potentially important source for generation of toxic tau oligomers in tau-related neurodegenerative diseases. Our results also reveal a general principle that phase-separated RBP droplets provide a vehicle for coassortment of selected proteins. Tau selectively copartitions with TIA1 under physiological conditions, emphasizing the importance of TIA1 for tau biology. Other RBPs, such as G3BP1, are able to copartition with tau, but this happens only in the presence of crowding agents. This type of selective mixing might provide a basis through which membraneless organelles bring together functionally relevant proteins to promote particular biological activities.</p>]]></description>
            <pubDate><![CDATA[2021-02-22T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Neural interfacing architecture enables enhanced motor control and residual limb functionality postamputation]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765991210851-2ecb4c80-95fd-4073-8d1f-6c66a34ec609/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2019555118</link>
            <description><![CDATA[<p class="para" id="N65542">Despite advancements in prosthetic technologies, persons with amputation today suffer great diminution in mobility and quality of life. This is largely due to an outdated amputation paradigm that precludes efficacious communication between the residual limb and prosthesis. An amputation method utilizing agonist–antagonist myoneural interfaces (AMIs) constructs neuromuscular substrates in the residual limb to avail enhanced sensorimotor signaling. In our study, subjects with AMI amputation demonstrate improved motor control, phantom sensations, range of motion, and decreased pain when compared to patients with traditional amputation. With the demonstrated increases in motor coordination and position differentiation, our results suggest that patients with AMI amputation will be able to more efficaciously control bionic prostheses.</p><p class="para" id="N65539">Despite advancements in prosthetic technologies, patients with amputation today suffer great diminution in mobility and quality of life. We have developed a modified below-knee amputation (BKA) procedure that incorporates agonist–antagonist myoneural interfaces (AMIs), which surgically preserve and couple agonist–antagonist muscle pairs for the subtalar and ankle joints. AMIs are designed to restore physiological neuromuscular dynamics, enable bidirectional neural signaling, and offer greater neuroprosthetic controllability compared to traditional amputation techniques. In this prospective, nonrandomized, unmasked study design, 15 subjects with AMI below-knee amputation (AB) were matched with 7 subjects who underwent a traditional below-knee amputation (TB). AB subjects demonstrated significantly greater control of their residual limb musculature, production of more differentiable efferent control signals, and greater precision of movement compared to TB subjects (<i>P</i> &lt; 0.008). This may be due to the presence of greater proprioceptive inputs facilitated by the significantly higher fascicle strains resulting from coordinated muscle excursion in AB subjects (<i>P</i> &lt; 0.05). AB subjects reported significantly greater phantom range of motion postamputation (AB: 12.47 ± 2.41, TB: 10.14 ± 1.45 degrees) when compared to TB subjects (<i>P</i> &lt; 0.05). Furthermore, AB subjects also reported less pain (12.25 ± 5.37) than TB subjects (17.29 ± 10.22) and a significant reduction when compared to their preoperative baseline (<i>P</i> &lt; 0.05). Compared with traditional amputation, the construction of AMIs during amputation confers the benefits of enhanced physiological neuromuscular dynamics, proprioception, and phantom limb perception. Subjects’ activation of the AMIs produces more differentiable electromyography (EMG) for myoelectric prosthesis control and demonstrates more positive clinical outcomes.</p>]]></description>
            <pubDate><![CDATA[2021-02-15T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[An increase in dendritic plateau potentials is associated with experience-dependent cortical map reorganization]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765990003789-1c483f84-6ac7-48ad-8238-e2db32e5a4e8/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2024920118</link>
            <description><![CDATA[<p class="para" id="N65542">Here we describe a mechanism for cortical map plasticity. Classically, representational map changes are thought to be driven by changes within cortico-cortical circuits, e.g., Hebbian plasticity of synaptic circuits that lost vs. maintained an excitatory drive from the first-order thalamus, possibly steered by neuromodulatory forces from deep brain regions. Our work provides evidence for an additional gating mechanism, provided by plateau potentials, which are driven by higher-order thalamic feedback. Higher-order thalamic neurons are characterized by broad receptive fields, and the plateau potentials that they evoke strongly facilitate long-term potentiation and elicit spikes. We show that these features combined constitute a powerful driving force for the fusion or expansion of sensory representations within cortical maps.</p><p class="para" id="N65539">The organization of sensory maps in the cerebral cortex depends on experience, which drives homeostatic and long-term synaptic plasticity of cortico-cortical circuits. In the mouse primary somatosensory cortex (S1) afferents from the higher-order, posterior medial thalamic nucleus (POm) gate synaptic plasticity in layer (L) 2/3 pyramidal neurons via disinhibition and the production of dendritic plateau potentials. Here we address whether these thalamocortically mediated responses play a role in whisker map plasticity in S1. We find that trimming all but two whiskers causes a partial fusion of the representations of the two spared whiskers, concomitantly with an increase in the occurrence of POm-driven <i>N</i>-methyl-D-aspartate receptor-dependent plateau potentials. Blocking the plateau potentials restores the archetypical organization of the sensory map. Our results reveal a mechanism for experience-dependent cortical map plasticity in which higher-order thalamocortically mediated plateau potentials facilitate the fusion of normally segregated cortical representations.</p>]]></description>
            <pubDate><![CDATA[2021-02-22T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Peripheral sensory stimulation elicits global slow waves by recruiting somatosensory cortex bilaterally]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765980846342-b7cb5598-5d63-459b-83c8-9a0800b15c82/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2021252118</link>
            <description><![CDATA[<p class="para" id="N65542">Slow waves are the predominant feature of brain activity during sleep and anesthesia. Slow waves are associated with plasticity, memory consolidation, and other brain functions. However, much remains unknown about the brain circuits that coordinate slow wave propagation. Here, we demonstrate that somatosensory stimulation evokes bilateral activation of primary somatosensory cortices (S1). Under anesthesia, S1 activation is followed by a global, front-to-back cortical slow wave. Using a focal lesion model, we show that evoked global slow waves depend on bilateral S1 activation, whereas spontaneous slow wave initiation does not depend on S1. These results demonstrate the existence of mechanisms by which focal injury may disrupt brain network dynamics.</p><p class="para" id="N65539">Slow waves (SWs) are globally propagating, low-frequency (0.5- to 4-Hz) oscillations that are prominent during sleep and anesthesia. SWs are essential to neural plasticity and memory. However, much remains unknown about the mechanisms coordinating SW propagation at the macroscale. To assess SWs in the context of macroscale networks, we recorded cortical activity in awake and ketamine/xylazine-anesthetized mice using widefield optical imaging with fluorescent calcium indicator GCaMP6f. We demonstrate that unilateral somatosensory stimulation evokes bilateral waves that travel across the cortex with state-dependent trajectories. Under anesthesia, we observe that rhythmic stimuli elicit globally resonant, front-to-back propagating SWs. Finally, photothrombotic lesions of S1 show that somatosensory-evoked global SWs depend on bilateral recruitment of homotopic primary somatosensory cortices. Specifically, unilateral lesions of S1 disrupt somatosensory-evoked global SW initiation from either hemisphere, while spontaneous SWs are largely unchanged. These results show that evoked SWs may be triggered by bilateral activation of specific, homotopically connected cortical networks.</p>]]></description>
            <pubDate><![CDATA[2021-02-17T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[An ecologically motivated image dataset for deep learning yields better models of human vision]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765978817339-cc632312-3602-478f-8726-31333b51164e/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2011417118</link>
            <description><![CDATA[<p class="para" id="N65542">Inspired by core principles of information processing in the brain, deep neural networks (DNNs) have demonstrated remarkable success in computer vision applications. At the same time, networks trained on the task of object classification exhibit similarities to representations found in the primate visual system. This result is surprising because the datasets commonly used for training are designed to be engineering challenges. Here, we use linguistic corpus statistics and human concreteness ratings as guiding principles to design a resource that more closely mirrors categories that are relevant to humans. The result is ecoset, a collection of 1.5 million images from 565 basic-level categories. We show that ecoset-trained DNNs yield better models of human higher-level visual cortex and human behavior.</p><p class="para" id="N65539">Deep neural networks provide the current best models of visual information processing in the primate brain. Drawing on work from computer vision, the most commonly used networks are pretrained on data from the ImageNet Large Scale Visual Recognition Challenge. This dataset comprises images from 1,000 categories, selected to provide a challenging testbed for automated visual object recognition systems. Moving beyond this common practice, we here introduce <i>ecoset</i>, a collection of &gt;1.5 million images from 565 basic-level categories selected to better capture the distribution of objects relevant to humans. Ecoset categories were chosen to be both frequent in linguistic usage and concrete, thereby mirroring important physical objects in the world. We test the effects of training on this ecologically more valid dataset using multiple instances of two neural network architectures: AlexNet and vNet, a novel architecture designed to mimic the progressive increase in receptive field sizes along the human ventral stream. We show that training on ecoset leads to significant improvements in predicting representations in human higher-level visual cortex and perceptual judgments, surpassing the previous state of the art. Significant and highly consistent benefits are demonstrated for both architectures on two separate functional magnetic resonance imaging (fMRI) datasets and behavioral data, jointly covering responses to 1,292 visual stimuli from a wide variety of object categories. These results suggest that computational visual neuroscience may take better advantage of the deep learning framework by using image sets that reflect the human perceptual and cognitive experience. Ecoset and trained network models are openly available to the research community.</p>]]></description>
            <pubDate><![CDATA[2021-02-15T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Placental genomic risk scores and early neurodevelopmental outcomes]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765902941820-8474859d-273f-4fb1-9bba-01fa91230381/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2019789118</link>
            <description><![CDATA[<p class="para" id="N65542">Environmental and genetic risk factors, and the early antecedents of schizophrenia, represent pieces of a puzzle still far from completion. We show that, in infants with a history of prenatal complications, a measure of genomic risk for schizophrenia linked with placental gene expression is associated with early neurodevelopmental trajectories of risk, particularly in male individuals. While the majority of individuals on this altered neurodevelopmental path likely “canalize” back toward normal development, some may not be rescued and instead “decanalize” toward illness. Specific strategies of prevention may benefit from understanding the unique placental effects of schizophrenia genomic risk and from defining which factors contribute to decanalize the neurodevelopmental trajectories of individuals with a history of risk factors who develop schizophrenia.</p><p class="para" id="N65539">Tracing the early paths leading to developmental disorders is critical for prevention. In previous work, we detected an interaction between genomic risk scores for schizophrenia (GRSs) and early-life complications (ELCs), so that the liability of the disorder explained by genomic risk was higher in the presence of a history of ELCs, compared with its absence. This interaction was specifically driven by loci harboring genes highly expressed in placentae from normal and complicated pregnancies [G. Ursini et al., <i>Nat. Med.</i> 24, 792–801 (2018)]. Here, we analyze whether fractionated genomic risk scores for schizophrenia and other developmental disorders and traits, based on placental gene-expression loci (PlacGRSs), are linked with early neurodevelopmental outcomes in individuals with a history of ELCs. We found that schizophrenia’s PlacGRSs are negatively associated with neonatal brain volume in singletons and offspring of multiple pregnancies and, in singletons, with cognitive development at 1 y and, less strongly, at 2 y, when cognitive scores become more sensitive to other factors. These negative associations are stronger in males, found only with GRSs fractionated by placental gene expression, and not found in PlacGRSs for other developmental disorders and traits. The relationship of PlacGRSs with brain volume persists as an anlage of placenta biology in adults with schizophrenia, again selectively in males. Higher placental genomic risk for schizophrenia, in the presence of ELCs and particularly in males, alters early brain growth and function, defining a potentially reversible neurodevelopmental path of risk that may be unique to schizophrenia.</p>]]></description>
            <pubDate><![CDATA[2021-02-08T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Symmetrical arrangement of proteins under release-ready vesicles in presynaptic terminals]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765863774769-73dd3bc6-998b-42f5-8292-6462f8bcf4cb/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2024029118</link>
            <description><![CDATA[<p class="para" id="N65542">Neuronal cells maintain a small number of synaptic vesicles (SVs) that are “primed,” i.e., ready to release upon receiving the triggering signal to allow for tightly regulated and rapid release of neurotransmitters. The proteins involved in this process are known, but how they assemble and operate together is poorly understood. Here we report the visualization of protein organization under primed SVs in cultured neurons under native conditions. Using cryoelectron tomography analysis, we find that there is a symmetric arrangement of exactly six protein densities at the docking interface, suggesting the fusion machinery is well ordered and prearranged for fast and precise release of neurotransmitters.</p><p class="para" id="N65539">Controlled release of neurotransmitters stored in synaptic vesicles (SVs) is a fundamental process that is central to all information processing in the brain. This relies on tight coupling of the SV fusion to action potential-evoked presynaptic Ca<sup>2+</sup> influx. This Ca<sup>2+</sup>-evoked release occurs from a readily releasable pool (RRP) of SVs docked to the plasma membrane (PM). The protein components involved in initial SV docking/tethering and the subsequent priming reactions which make the SV release ready are known. Yet, the supramolecular architecture and sequence of molecular events underlying SV release are unclear. Here, we use cryoelectron tomography analysis in cultured hippocampal neurons to delineate the arrangement of the exocytosis machinery under docked SVs. Under native conditions, we find that vesicles are initially “tethered” to the PM by a variable number of protein densities (∼10 to 20 nm long) with no discernible organization. In contrast, we observe exactly six protein masses, each likely consisting of a single SNAREpin with its bound Synaptotagmins and Complexin, arranged symmetrically connecting the “primed” vesicles to the PM. Our data indicate that the fusion machinery is likely organized into a highly cooperative framework during the priming process which enables rapid SV fusion and neurotransmitter release following Ca<sup>2+</sup> influx.</p>]]></description>
            <pubDate><![CDATA[2021-01-18T00:00]]></pubDate>
        </item><item>
            <title><![CDATA[Lysergic acid diethylamide (LSD) promotes social behavior through mTORC1 in the excitatory neurotransmission]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765863528581-e6ce5592-742a-4a89-a349-a56a23b724c5/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2020705118</link>
            <description><![CDATA[<p class="para" id="N65542">Social behavior (SB) is a fundamental hallmark of human interaction. Repeated administration of low doses of the 5-HT<sub>2A</sub> agonist lysergic acid diethylamide (LSD) in mice enhances SB by potentiating 5-HT<sub>2A</sub> and AMPA receptor neurotransmission in the mPFC via an increasing phosphorylation of the mTORC1, a protein involved in the modulation of SB. Moreover, the inactivation of mPFC glutamate neurotransmission impairs SB and nullifies the prosocial effects of LSD. Finally, LSD requires the integrity of mTORC1 in excitatory glutamatergic, but not in inhibitory neurons, to produce prosocial effects. This study unveils a mechanism contributing to the role of 5-HT<sub>2A</sub> agonism in the modulation of SB.</p><p class="para" id="N65539">Clinical studies have reported that the psychedelic lysergic acid diethylamide (LSD) enhances empathy and social behavior (SB) in humans, but its mechanism of action remains elusive. Using a multidisciplinary approach including in vivo electrophysiology, optogenetics, behavioral paradigms, and molecular biology, the effects of LSD on SB and glutamatergic neurotransmission in the medial prefrontal cortex (mPFC) were studied in male mice. Acute LSD (30 μg/kg) injection failed to increase SB. However, repeated LSD (30 μg/kg, once a day, for 7 days) administration promotes SB, without eliciting antidepressant/anxiolytic-like effects. Optogenetic inhibition of mPFC excitatory neurons dramatically inhibits social interaction and nullifies the prosocial effect of LSD. LSD potentiates the α-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA) and 5-HT<sub>2A</sub>, but not <i>N</i>-methyl-D-aspartate (NMDA) and 5-HT<sub>1A</sub>, synaptic responses in the mPFC and increases the phosphorylation of the serine-threonine protein kinases Akt and mTOR. In conditional knockout mice lacking Raptor (one of the structural components of the mTORC1 complex) in excitatory glutamatergic neurons (<i>Raptor</i><sup><i>f/f</i></sup><i>:Camk2alpha-Cre</i>), the prosocial effects of LSD and the potentiation of 5-HT<sub>2A</sub>/AMPA synaptic responses were nullified, demonstrating that LSD requires the integrity of mTORC1 in excitatory neurons to promote SB. Conversely, in knockout mice lacking Raptor in GABAergic neurons of the mPFC (<i>Raptor</i><sup><i>f/f</i></sup><i>:Gad2-Cre</i>), LSD promotes SB. These results indicate that LSD selectively enhances SB by potentiating mPFC excitatory transmission through 5-HT<sub>2A</sub>/AMPA receptors and mTOR signaling. The activation of 5-HT<sub>2A</sub>/AMPA/mTORC1 in the mPFC by psychedelic drugs should be explored for the treatment of mental diseases with SB impairments such as autism spectrum disorder and social anxiety disorder.</p>]]></description>
            <pubDate><![CDATA[2021-01-25T00:00]]></pubDate>
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            <title><![CDATA[Time-evolving controllability of effective connectivity networks during seizure progression]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765863510597-79658636-a375-4b5a-a5bf-4f7ec94af4fa/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2006436118</link>
            <description><![CDATA[<p class="para" id="N65542">Responsive neurostimulation is an increasingly accessible treatment for medication-resistant epilepsy that aims to suppress seizures using electrical stimulation from implanted intracranial electrodes. However, the optimal cortical location and time point for intervening once a seizure begins are not well understood. Here we represent a seizure as a series of effective connectivity networks over time and compute metrics of network controllability and optimal control energy. Our results allow us to characterize when and where the brain network may be the most responsive to an external stimulus.</p><p class="para" id="N65539">Over one third of the estimated 3 million people with epilepsy in the United States are medication resistant. Responsive neurostimulation from chronically implanted electrodes provides a promising treatment alternative to resective surgery. However, determining optimal personalized stimulation parameters, including when and where to intervene to guarantee a positive patient outcome, is a major open challenge. Network neuroscience and control theory offer useful tools that may guide improvements in parameter selection for control of anomalous neural activity. Here we use a method to characterize dynamic controllability across consecutive effective connectivity (EC) networks based on regularized partial correlations between implanted electrodes during the onset, propagation, and termination regimes of 34 seizures. We estimate regularized partial correlation adjacency matrices from 1-s time windows of intracranial electrocorticography recordings using the Graphical Least Absolute Shrinkage and Selection Operator (GLASSO). Average and modal controllability metrics calculated from each resulting EC network track the time-varying controllability of the brain on an evolving landscape of conditionally dependent network interactions. We show that average controllability increases throughout a seizure and is negatively correlated with modal controllability throughout. Our results support the hypothesis that the energy required to drive the brain to a seizure-free state from an ictal state is smallest during seizure onset, yet we find that applying control energy at electrodes in the seizure onset zone may not always be energetically favorable. Our work suggests that a low-complexity model of time-evolving controllability may offer insights for developing and improving control strategies targeting seizure suppression.</p>]]></description>
            <pubDate><![CDATA[2021-01-25T00:00]]></pubDate>
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            <title><![CDATA[PIAS1 modulates striatal transcription, DNA damage repair, and SUMOylation with relevance to Huntington’s disease]]></title>
            <media:thumbnail url="https://storage.googleapis.com/nova-demo-unsecured-files/unsecured/content-1765849442359-f99ad3a4-17c6-4ae3-b52e-829f874802c0/cover.png"></media:thumbnail>
            <link>https://www.novareader.co/book/isbn/10.1073/pnas.2021836118</link>
            <description><![CDATA[<p class="para" id="N65542">Genetic variants in genes involved in maintenance of genomic stability are modifiers of Huntington’s disease (HD) age of onset. This study shows a connection between the E3 SUMO ligase PIAS1, DNA damage repair protein PNKP, and HD-associated transcriptional dysregulation. Reduction of Pias1 in a knockin HD mouse striatum normalizes disease-associated aberrant transcription, rescues perturbed enzymatic activity of Pnkp, and increases genomic integrity, while also having transcriptional effects in WT animals. PIAS1 reduction in human iPSC neurons alters transcription of synaptic signaling and DNA damage repair, rescues PNKP activity, and increases genomic integrity in HD iPSC-derived neurons. Finally, PIAS1 can modulate SUMO modification of PNKP, which is the first identification of an enzyme that regulates this modification.</p><p class="para" id="N65539">DNA damage repair genes are modifiers of disease onset in Huntington’s disease (HD), but how this process intersects with associated disease pathways remains unclear. Here we evaluated the mechanistic contributions of protein inhibitor of activated STAT-1 (PIAS1) in HD mice and HD patient-derived induced pluripotent stem cells (iPSCs) and find a link between PIAS1 and DNA damage repair pathways. We show that PIAS1 is a component of the transcription-coupled repair complex, that includes the DNA damage end processing enzyme polynucleotide kinase-phosphatase (PNKP), and that PIAS1 is a SUMO E3 ligase for PNKP. Pias1 knockdown (KD) in HD mice had a normalizing effect on HD transcriptional dysregulation associated with synaptic function and disease-associated transcriptional coexpression modules enriched for DNA damage repair mechanisms as did reduction of PIAS1 in HD iPSC-derived neurons. KD also restored mutant HTT-perturbed enzymatic activity of PNKP and modulated genomic integrity of several transcriptionally normalized genes. The findings here now link SUMO modifying machinery to DNA damage repair responses and transcriptional modulation in neurodegenerative disease.</p>]]></description>
            <pubDate><![CDATA[2021-01-18T00:00]]></pubDate>
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