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Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces
Jiarui Ding, Aviv Regev
Publication Date: 05 May, 2021
Article Pages: 1 Open access contents
Integrative reconstruction of cancer genome karyotypes using InfoGenomeR
Yeonghun Lee, Hyunju Lee
Publication Date: 29 April, 2021
Article Pages: 1 Open access contents
Protein design and variant prediction using autoregressive generative models
Jung-Eun Shin, Adam J. Riesselman, Aaron W. Kollasch, Conor McMahon, Elana Simon, Chris Sander, Aashish Manglik, Andrew C. Kruse, Debora S. Marks
Publication Date: 23 April, 2021
Article Pages: 1 Open access contents
Leveraging community mortality indicators to infer COVID-19 mortality and transmission dynamics in Damascus, Syria
Oliver J. Watson, Mervat Alhaffar, Zaki Mehchy, Charles Whittaker, Zack Akil, Nicholas F. Brazeau, Gina Cuomo-Dannenburg, Arran Hamlet, Hayley A. Thompson, Marc Baguelin, Richard G. FitzJohn, Edward Knock, John A. Lees, Lilith K. Whittles, Thomas Mellan, Peter Winskill, Samir Bhatt, Bimandra A. Djaafara, Christl A. Donnelly, Seth Flaxman, Katy A. M. Gaythorpe, Natsuko Imai, Elita Jauneikaite, Daniel J. Laydon, Swapnil Mishra, H. Juliette T. Unwin, Robert Verity, Natasha Howard, Hannah Clapham, Francesco Checchi, Neil Ferguson, Azra Ghani, Emma Beals, Patrick Walker
Publication Date: 22 April, 2021
Article Pages: 1 Open access contents
Conserved long-range base pairings are associated with pre-mRNA processing of human genes
Svetlana Kalmykova, Marina Kalinina, Stepan Denisov, Alexey Mironov, Dmitry Skvortsov, Roderic Guigó, Dmitri Pervouchine
Publication Date: 16 April, 2021
Article Pages: 1 Open access contents
Author Correction: DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires
John-William Sidhom, H. Benjamin Larman, Drew M. Pardoll, Alexander S. Baras
Publication Date: 13 April, 2021
Article Pages: 1 Open access contents
RA3 is a reference-guided approach for epigenetic characterization of single cells
Shengquan Chen, Guanao Yan, Wenyu Zhang, Jinzhao Li, Rui Jiang, Zhixiang Lin
Publication Date: 12 April, 2021
Article Pages: 1 Open access contents
Learning <i>cis</i>-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis
Xin Liu, Tao Sun, Anna Shcherbina, Qin Li, Inga Jarmoskaite, Kalli Kappel, Gokul Ramaswami, Rhiju Das, Anshul Kundaje, Jin Billy Li
Publication Date: 12 April, 2021
Article Pages: 1 Open access contents
Harnessing machine learning to guide phylogenetic-tree search algorithms
Dana Azouri, Shiran Abadi, Yishay Mansour, Itay Mayrose, Tal Pupko
Publication Date: 31 March, 2021
Article Pages: 1 Open access contents
Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England
James D. Munday, Katharine Sherratt, Sophie Meakin, Akira Endo, Carl A. B. Pearson, Joel Hellewell, Sam Abbott, Nikos I. Bosse, Rosalind M. Eggo, David Simons, Kathleen O’Reilly, Timothy W. Russell, Rachel Lowe, Quentin J. Leclerc, Jon C. Emery, Petra Klepac, Emily S. Nightingale, Matthew Quaife, Kevin van Zandvoort, Gwenan M. Knight, Thibaut Jombart, C. Julian Villabona-Arenas, Eleanor M. Rees, Charlie Diamond, Megan Auzenbergs, Graham Medley, Anna M. Foss, Georgia R. Gore-Langton, Arminder K. Deol, Mark Jit, Hamish P. Gibbs, Simon R. Procter, Alicia Rosello, Christopher I. Jarvis, Yang Liu, Rein M. G. J. Houben, Stéphane Hué, Samuel Clifford, Billy J. Quilty, Amy Gimma, Damien C. Tully, Fiona Yueqian Sun, Kiesha Prem, Katherine E. Atkins, Jacco Wallinga, W. John Edmunds, Albert Jan van Hoek, Sebastian Funk
Publication Date: 29 March, 2021
Article Pages: 1 Open access contents
The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA
Jasmine Cubuk, Jhullian J. Alston, J. Jeremías Incicco, Sukrit Singh, Melissa D. Stuchell-Brereton, Michael D. Ward, Maxwell I. Zimmerman, Neha Vithani, Daniel Griffith, Jason A. Wagoner, Gregory R. Bowman, Kathleen B. Hall, Andrea Soranno, Alex S. Holehouse
Publication Date: 29 March, 2021
Article Pages: 1 Open access contents
Hospital load and increased COVID-19 related mortality in Israel
Hagai Rossman, Tomer Meir, Jonathan Somer, Smadar Shilo, Rom Gutman, Asaf Ben Arie, Eran Segal, Uri Shalit, Malka Gorfine
Publication Date: 26 March, 2021
Article Pages: 1 Open access contents
scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses
Juexin Wang, Anjun Ma, Yuzhou Chang, Jianting Gong, Yuexu Jiang, Ren Qi, Cankun Wang, Hongjun Fu, Qin Ma, Dong Xu
Publication Date: 25 March, 2021
Article Pages: 1 Open access contents
Controlling network ensembles
Isaac Klickstein, Francesco Sorrentino
Publication Date: 25 March, 2021
Article Pages: 1 Open access contents
Cells recognize osmotic stress through liquid–liquid phase separation lubricated with poly(ADP-ribose)
Kengo Watanabe, Kazuhiro Morishita, Xiangyu Zhou, Shigeru Shiizaki, Yasuo Uchiyama, Masato Koike, Isao Naguro, Hidenori Ichijo
Publication Date: 01 March, 2021
Article Pages: 1 Open access contents
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